home/private_dot_config/astronvim/lua/user/plugins/init.lua

@@ -30,5 +30,4 @@ return {
       require("catppuccin").setup {}
     end,
   },
-  { 'LnL7/vim-nix' },
 }

home/private_dot_config/nvim/init.lua

@@ -0,0 +1,4 @@
+require('settings')
+--require('plugins')
+require('keybindings')
+

home/private_dot_config/nvim/init.vim.bak

@@ -0,0 +1,87 @@
+" Custom Mappings
+imap jj <Esc>
+
+"---------------
+" Tabs
+"---------------
+set tabstop=4
+set softtabstop=4
+set shiftwidth=4
+set noexpandtab
+
+" Use case insensitive search, except when using capital letters
+set ignorecase
+set smartcase
+
+" When opening a new line and no filetype-specific indenting is enabled, keep
+" the same indent as the line you're currently on. Useful for READMEs, etc.
+set autoindent
+
+" Display line numbers on the left
+set number
+
+" Increase undo limit
+set history=1000
+
+" Disable swap files
+set noswapfile
+
+" Show lines above and below cursor
+set scrolloff=5
+
+" Update every 300 ms
+set updatetime=300
+
+
+let data_dir = has('nvim') ? stdpath('data') . '/site' : '~/.vim'
+if empty(glob(data_dir . '/autoload/plug.vim'))
+  silent execute '!curl -fLo '.data_dir.'/autoload/plug.vim --create-dirs  https://raw.githubusercontent.com/junegunn/vim-plug/master/plug.vim'
+  autocmd VimEnter * PlugInstall --sync | source $MYVIMRC
+endif
+
+
+"---------------
+" Plugins
+"---------------
+call plug#begin()
+	Plug 'preservim/NERDTree'
+    Plug 'Xuyuanp/nerdtree-git-plugin'
+	Plug 'ntpeters/vim-better-whitespace'
+	Plug 'mhinz/vim-startify'
+	Plug 'neoclide/coc.nvim', {'branch': 'release'}
+	Plug 'cespare/vim-toml', { 'branch': 'main' }
+    Plug 'snakemake/snakemake', {'rtp': 'misc/vim'}
+	Plug 'airblade/vim-gitgutter'
+call plug#end()
+
+nnoremap <leader>n :NERDTreeFocus<CR>
+nnoremap <C-n> :NERDTree<CR>
+nnoremap <C-t> :NERDTreeToggle<CR>
+nnoremap <C-f> :NERDTreeFind<CR>
+
+let g:NERDTreeGitStatusUseNerdFonts = 1 " you should install nerdfonts by yourself. default: 0
+
+"---------------
+"COC Config
+"---------------
+
+" Use tab for trigger completion with characters ahead and navigate.
+" NOTE: Use command ':verbose imap <tab>' to make sure tab is not mapped by
+" other plugin before putting this into your config.
+inoremap <silent><expr> <TAB>
+	\ pumvisible() ? "\<C-n>" :
+	\ <SID>check_back_space() ? "\<TAB>" :
+	\ coc#refresh()
+inoremap <expr><S-TAB> pumvisible() ? "\<C-p>" : "\<C-h>"
+
+function! s:check_back_space() abort
+	let col = col('.') - 1
+	return !col || getline('.')[col - 1]  =~# '\s'
+endfunction
+
+
+"---------------
+"Gitgutter
+"---------------
+"turn off background of git sign column
+highlight! link SignColumn LineNr

home/private_dot_config/nvim/lua/configs/startup.lua

@@ -0,0 +1,3 @@
+local settings = require"startup.themes.startify"
+
+return settings

home/private_dot_config/nvim/lua/keybindings.lua

@@ -0,0 +1,12 @@
+-- Map a key with optional options
+function map(mode, keys, action, options)
+  if options == nil then
+    options = {}
+  end
+  vim.api.nvim_set_keymap(mode,keys,action,options)
+end
+
+
+map('i','jk','<Esc>',{noremap=true})
+map('v','jk','<Esc>',{noremap=true})
+

home/private_dot_config/nvim/lua/plugins.lua

@@ -0,0 +1,93 @@
+-- LOAD THE PLUGINS
+
+-- install packer on the fly
+-- local fn = vim.Fn
+-- local install_path = fn.stdpath('data')..'/site/pack/packer/start/packer.nvim'
+-- if fn.empty(fn.glob(install_path)) > 0 then
+--   packer_bootstrap = fn.system({'git', 'clone', '--depth', '1', 'https://github.com/wbthomason/packer.nvim', install_path})
+-- end
+--
+
+
+return require('packer').startup(function(use)
+  use 'wbthomason/packer.nvim'
+
+  use 'preservim/NERDTree'
+
+  use {
+    'goolord/alpha-nvim',
+    requires = { 'kyazdani42/nvim-web-devicons' },
+    config = function ()
+        require'alpha'.setup(require'alpha.themes.startify'.opts)
+    end
+  }
+
+  -- use {
+  --   'airblade/vim-gitgutter',
+  --   config = function()
+  --     local cmd = vim.cmd
+  --     cmd [[highlight! link SignColumn LineNr]]
+  --   end
+  -- }
+  --
+  use {
+    'norcalli/nvim-colorizer.lua',
+    conifg = function()
+        require'colorizer'.setup()
+    end
+    }
+
+  use {
+    'numToStr/Comment.nvim',
+    config = function()
+        require('Comment').setup()
+    end
+}
+
+  use {
+  "folke/which-key.nvim",
+  config = function()
+    require("which-key").setup()
+    end
+  }
+
+  use {
+    "ggandor/lightspeed.nvim"
+  }
+  use {
+    "ntpeters/vim-better-whitespace",
+    config = function()
+    local cmd = vim.cmd
+    cmd [[ let g:strip_whitespace_on_save = 1 ]]
+    end
+}
+
+use {
+  'lewis6991/gitsigns.nvim',
+  requires = {
+    'nvim-lua/plenary.nvim'
+  },
+  config = function()
+    require('gitsigns').setup()
+  end
+}
+
+  -- style
+  use 'Mofiqul/dracula.nvim'
+
+  -- language specific plugins
+  -- python
+  use {
+    'snakemake/snakemake',
+    rtp="misc/vim",
+    ft={"Snakefile","snk"}
+  }
+
+  -- toml
+  use 'cespare/vim-toml'
+     vim.g.strip_whitespace_on_save = 1
+
+  if packer_bootstrap then
+    require('packer').sync()
+  end
+end)

home/private_dot_config/nvim/lua/settings.lua

@@ -0,0 +1,34 @@
+-- general settings
+local o = vim.o
+local w = vim.wo
+local b = vim.bo
+
+vim.g.mapleader = ' '
+
+b.autoindent = true
+b.expandtab = true
+b.softtabstop = 4
+b.shiftwidth = 4
+
+b.tabstop = 4
+b.smartindent = true
+b.modeline = false
+b.shiftwidth = 4
+b.tabstop = 4
+b.smartindent = true
+b.modeline = false
+
+o.swapfile = false
+o.scrolloff = 5
+o.updatetime = 300
+
+w.number = true
+
+if vim.fn.has('multi_byte') == 1 and vim.o.encoding == 'utf-8' then
+  o.listchars = [[tab:▸ ,extends:❯,precedes:❮,nbsp:±,trail:…]]
+else
+  o.listchars = [[tab:> ,extends:>,precedes:<,nbsp:.,trail:_]]
+end
+
+o.timeoutlen = 300
+