update completions

home/private_dot_config/gtk-4.0/settings.ini

@@ -1,13 +1,4 @@
 [Settings]
-gtk-icon-theme-name=Papirus-Dark
+; gtk-icon-theme-name=breeze
+; gtk-theme-name=Catppuccin-Mocha-Standard-Rosewater-Dark
 gtk-application-prefer-dark-theme=false
-gtk-cursor-theme-name=Catppuccin-Mocha-Dark-Cursors
-gtk-cursor-theme-size=24
-gtk-decoration-layout=icon:minimize,maximize,close
-gtk-enable-animations=true
-gtk-font-name=Noto Sans,  10
-gtk-icon-theme-name=breeze
-gtk-modules=colorreload-gtk-module
-gtk-primary-button-warps-slider=false
-gtk-theme-name=Catppuccin-Mocha-Standard-Rosewater-Dark
-gtk-xft-dpi=98304

home/private_dot_config/gtk-4.0/symlink_assets

@@ -1 +0,0 @@
-/usr/share/themes/Catppuccin-Mocha-Standard-Rosewater-dark/gtk-4.0/assets

home/private_dot_config/gtk-4.0/symlink_gtk-dark.css

@@ -1 +0,0 @@
-/usr/share/themes/Catppuccin-Mocha-Standard-Rosewater-dark/gtk-4.0/gtk-dark.css

home/private_dot_config/gtk-4.0/symlink_gtk.css

@@ -1 +0,0 @@
-/usr/share/themes/Catppuccin-Mocha-Standard-Rosewater-dark/gtk-4.0/gtk.css

home/private_dot_config/hypr/conf/execs.conf

@@ -3,7 +3,7 @@
 exec = swww init
 
 exec-once = dunst -conf ~/.config/hypr/dunstrc
-# exec-once = udiskie &
+exec-once = udiskie &
 exec-once = xprop -root -f _XWAYLAND_GLOBAL_OUTPUT_SCALE 32c -set _XWAYLAND_GLOBAL_OUTPUT_SCALE 2
 
 exec = hypridle

home/private_dot_config/nvim/lua/config/options.lua

@@ -11,4 +11,4 @@ vim.opt.timeoutlen = 200
 vim.g.autoformat = false
 
 -- https://github.com/ziglang/zig.vim/issues/51#issuecomment-1637180522
--- vim.g.zig_fmt_autosave = 0
+vim.g.zig_fmt_autosave = 0

home/private_dot_config/nvim/spell/en.utf-8.add

@@ -40,3 +40,10 @@ thermocycler
 insert
 gRNA
 linearized
+on
+titer
+lentiviral
+transfection
+transduce
+transduction
+nimscript

home/private_dot_config/private_gtk-3.0/settings.ini

@@ -1,15 +1,4 @@
 [Settings]
+; gtk-icon-theme-name=breeze
+; gtk-theme-name=Catppuccin-Mocha-Standard-Rosewater-Dark
 gtk-application-prefer-dark-theme=false
-gtk-button-images=true
-gtk-cursor-theme-name=Catppuccin-Mocha-Dark-Cursors
-gtk-cursor-theme-size=24
-gtk-decoration-layout=icon:minimize,maximize,close
-gtk-enable-animations=true
-gtk-font-name=Noto Sans,  10
-gtk-icon-theme-name=breeze
-gtk-menu-images=true
-gtk-modules=colorreload-gtk-module
-gtk-primary-button-warps-slider=false
-gtk-theme-name=Catppuccin-Mocha-Standard-Rosewater-Dark
-gtk-toolbar-style=3
-gtk-xft-dpi=98304

home/private_dot_config/zsh/completions/_pdm

@@ -30,7 +30,10 @@ _pdm() {
     'list:List packages installed in the current working set'
     'lock:Resolve and lock dependencies'
     'self:Manage the PDM program itself (previously known as plugin)'
+    'outdated:Check for outdated packages and list the latest versions'
     'publish:Build and publish the project to PyPI'
+    'python:Manage installed Python interpreters'
+    'py:Manage installed Python interpreters'
     'remove:Remove packages from pyproject.toml'
     'run:Run commands or scripts with local packages loaded'
     'search:Search for PyPI packages'
@@ -46,6 +49,7 @@ _pdm() {
     {-c,--config}'[Specify another config file path\[env var: PDM_CONFIG_FILE\]]' \
     {-V,--version}'[Show the version and exit]' \
     {-I,--ignore-python}'[Ignore the Python path saved in .pdm-python]' \
+    '--no-cache:Disable the cache for the current command. [env var: PDM_NO_CACHE]' \
     '--pep582:Print the command line to be eval by the shell:shell:(zsh bash fish tcsh csh)' \
     '*:: :->_subcmds' \
     && return 0
@@ -83,6 +87,7 @@ _pdm() {
         "--stable[Only allow stable versions to be pinned]"
         {-e+,--editable+}'[Specify editable packages]:packages'
         {-x,--fail-fast}'[Abort on first installation error]'
+        {-C,--config-setting}'[Pass options to the backend. options with a value must be specified after "=": "--config-setting=key(=value)" or "-Ckey(=value)"]:cs:'
         "--no-isolation[do not isolate the build in a clean environment]"
         "--dry-run[Show the difference only without modifying the lockfile content]"
         '*:packages:_pdm_pip_packages'
@@ -95,7 +100,7 @@ _pdm() {
         {-d+,--dest+}'[Target directory to put artifacts]:directory:_files -/'
         {-k,--skip}'[Skip some tasks and/or hooks by their comma-separated names]'
         '--no-clean[Do not clean the target directory]'
-        {-C,--config-setting}'[Pass options to the backend. options with a value must be specified after "=": "--config-setting=--opt(=value)" or "-C--opt(=value)"]'
+        {-C,--config-setting}'[Pass options to the backend. options with a value must be specified after "=": "--config-setting=key(=value)" or "-Ckey(=value)"]:cs:'
         "--no-isolation[do not isolate the build in a clean environment]"
       )
       ;;
@@ -156,7 +161,8 @@ _pdm() {
         "--editable-self[Include the project itself as an editable dependency]"
         {-L,--lockfile}'[Specify another lockfile path, or use `PDM_LOCKFILE` env variable. Default: pdm.lock]:lockfile:_files'
         {-o+,--output+}"[Write output to the given file, or print to stdout if not given]:output file:_files"
-        {-G+,--group+}'[Select group of optional-dependencies or dev-dependencies(with -d). Can be supplied multiple times, use ":all" to include all groups under the same species]:group:_pdm_groups'
+        {-G+,--group+,--with+}'[Select group of optional-dependencies or dev-dependencies(with -d). Can be supplied multiple times, use ":all" to include all groups under the same species]:group:_pdm_groups'
+        "--without+[Exclude groups of optional-dependencies or dev-dependencies]:group:_pdm_groups"
         {-d,--dev}"[Select dev dependencies]"
         {--prod,--production}"[Unselect dev dependencies]"
         "--no-default[Don't include dependencies from the default group]"
@@ -204,7 +210,8 @@ _pdm() {
     install)
       arguments+=(
         {-g,--global}'[Use the global project, supply the project root with `-p` option]'
-        {-G+,--group+}'[Select group of optional-dependencies or dev-dependencies(with -d). Can be supplied multiple times, use ":all" to include all groups under the same species]:group:_pdm_groups'
+        {-G+,--group+,--with+}'[Select group of optional-dependencies or dev-dependencies(with -d). Can be supplied multiple times, use ":all" to include all groups under the same species]:group:_pdm_groups'
+        "--without+[Exclude groups of optional-dependencies or dev-dependencies]:group:_pdm_groups"
         {-d,--dev}"[Select dev dependencies]"
         {-L,--lockfile}'[Specify another lockfile path, or use `PDM_LOCKFILE` env variable. Default: pdm.lock]:lockfile:_files'
         {--prod,--production}"[Unselect dev dependencies]"
@@ -214,6 +221,7 @@ _pdm() {
         '--no-editable[Install non-editable versions for all packages]'
         "--no-self[Don't install the project itself]"
         {-x,--fail-fast}'[Abort on first installation error]'
+        {-C,--config-setting}'[Pass options to the backend. options with a value must be specified after "=": "--config-setting=key(=value)" or "-Ckey(=value)"]:cs:'
         "--no-isolation[do not isolate the build in a clean environment]"
         "--dry-run[Show the difference only without modifying the lock file content]"
         "--check[Check if the lock file is up to date and fail otherwise]"
@@ -243,11 +251,13 @@ _pdm() {
       arguments+=(
         {-g,--global}'[Use the global project, supply the project root with `-p` option]'
         {-L,--lockfile}'[Specify another lockfile path, or use `PDM_LOCKFILE` env variable. Default: pdm.lock]:lockfile:_files'
+        {-C,--config-setting}'[Pass options to the backend. options with a value must be specified after "=": "--config-setting=key(=value)" or "-Ckey(=value)"]:cs:'
         "--no-isolation[Do not isolate the build in a clean environment]"
         {-k,--skip}'[Skip some tasks and/or hooks by their comma-separated names]'
-        "--refresh[Don't update pinned versions, only refresh the lock file]"
+        "--refresh[Refresh the content hash and file hashes in the lock file]"
         "--check[Check if the lock file is up to date and quit]"
-        {-G+,--group+}'[Select group of optional-dependencies or dev-dependencies(with -d). Can be supplied multiple times, use ":all" to include all groups under the same species]:group:_pdm_groups'
+        {-G+,--group+,--with+}'[Select group of optional-dependencies or dev-dependencies(with -d). Can be supplied multiple times, use ":all" to include all groups under the same species]:group:_pdm_groups'
+        "--without+[Exclude groups of optional-dependencies or dev-dependencies]:group:_pdm_groups"
         {-d,--dev}"[Select dev dependencies]"
         {--prod,--production}"[Unselect dev dependencies]"
         '--update-reuse[Reuse pinned versions already present in lock file if possible]'
@@ -256,9 +266,16 @@ _pdm() {
         "--no-static-urls[(DEPRECATED) Do not store static file URLs in the lockfile]"
         "--no-default[Don\'t include dependencies from the default group]"
         "--no-cross-platform[(DEPRECATED) Only lock packages for the current platform]"
+        "--exclude-newer[Exclude packages newer than the given UTC date in format YYYY-MM-DD\[THH:MM:SSZ\]]:exclude-newer:"
         {-S,--strategy}'[Specify lock strategy(cross_platform,static_urls,direct_minimal_versions). Add no_ prefix to disable. Support given multiple times or split by comma.]:strategy:'
       )
       ;;
+    outdated)
+      arguments+=(
+        '--json[Output in JSON format]'
+        '*:patterns:'
+      )
+      ;;
     self)
       _arguments -C \
         $arguments \
@@ -292,6 +309,7 @@ _pdm() {
             list)
               arguments+=(
                 '--plugins[List plugins only]'
+                '*:patterns:'
               )
               ;;
             update)
@@ -308,6 +326,40 @@ _pdm() {
       esac
       return $ret
       ;;
+    python|py)
+      _arguments -C \
+        $arguments \
+        ': :->command' \
+        '*:: :->args' && ret=0
+      case $state in
+        command)
+          local -a actions=(
+            "remove:Remove a Python interpreter installed with PDM"
+            "list:List all Python interpreters installed with PDM"
+            "install:Install a Python interpreter with PDM"
+          )
+          _describe -t command 'pdm python actions' actions && ret=0
+          ;;
+        args)
+          case $words[1] in
+            remove)
+              arguments+=(
+                ':python:'
+              )
+              ;;
+            install)
+              arguments+=(
+                '--list[List all available Python versions]'
+                ':python:_files'
+              )
+              ;;
+            *)
+              ;;
+          esac
+          ;;
+        esac
+      return $ret
+      ;;
     publish)
       arguments+=(
         {-r,--repository}'[The repository name or url to publish the package to }\[env var: PDM_PUBLISH_REPO\]]:repository:'
@@ -317,6 +369,7 @@ _pdm() {
         {-i,--identity}'[GPG identity used to sign files.]:gpg identity:'
         {-k,--skip}'[Skip some tasks and/or hooks by their comma-separated names]'
         {-c,--comment}'[The comment to include with the distribution file.]:comment:'
+        {-d,--dest}'[The directory to upload the package from]:dest:_files'
         "--no-verify-ssl[Disable SSL verification]"
         "--ca-certs[The path to a PEM-encoded Certificate Authority bundle to use for publish server validation]:cacerts:_files"
         "--no-build[Don't build the package before publishing]"
@@ -335,6 +388,7 @@ _pdm() {
         "--no-self[Don't install the project itself]"
         "--frozen-lockfile[Don't try to create or update the lockfile. \[env var: PDM_FROZEN_LOCKFILE\]]"
         {-x,--fail-fast}'[Abort on first installation error]'
+        {-C,--config-setting}'[Pass options to the backend. options with a value must be specified after "=": "--config-setting=key(=value)" or "-Ckey(=value)"]:cs:'
         "--no-isolation[do not isolate the build in a clean environment]"
         "--dry-run[Show the difference only without modifying the lockfile content]"
         '--venv[Run the command in the virtual environment with the given key. \[env var: PDM_IN_VENV\]]:venv:'
@@ -379,7 +433,8 @@ _pdm() {
     sync)
       arguments+=(
         {-g,--global}'[Use the global project, supply the project root with `-p` option]'
-        {-G+,--group+}'[Select group of optional-dependencies or dev-dependencies(with -d). Can be supplied multiple times, use ":all" to include all groups under the same species]:group:_pdm_groups'
+        {-G+,--group+,--with+}'[Select group of optional-dependencies or dev-dependencies(with -d). Can be supplied multiple times, use ":all" to include all groups under the same species]:group:_pdm_groups'
+        "--without+[Exclude groups of optional-dependencies or dev-dependencies]:group:_pdm_groups"
         {-d,--dev}"[Select dev dependencies]"
         {-L,--lockfile}'[Specify another lockfile path, or use `PDM_LOCKFILE` env variable. Default: pdm.lock]:lockfile:_files'
         {--prod,--production}"[Unselect dev dependencies]"
@@ -392,6 +447,7 @@ _pdm() {
         {-x,--fail-fast}'[Abort on first installation error]'
         '--no-editable[Install non-editable versions for all packages]'
         "--no-self[Don't install the project itself]"
+        {-C,--config-setting}'[Pass options to the backend. options with a value must be specified after "=": "--config-setting=key(=value)" or "-Ckey(=value)"]:cs:'
         "--no-isolation[do not isolate the build in a clean environment]"
         '--venv[Run the command in the virtual environment with the given key. \[env var: PDM_IN_VENV\]]:venv:'
       )
@@ -399,7 +455,8 @@ _pdm() {
     update)
       arguments+=(
         {-g,--global}'[Use the global project, supply the project root with `-p` option]'
-        {-G+,--group+}'[Select group of optional-dependencies or dev-dependencies(with -d). Can be supplied multiple times, use ":all" to include all groups under the same species]:group:_pdm_groups'
+        {-G+,--group+,--with+}'[Select group of optional-dependencies or dev-dependencies(with -d). Can be supplied multiple times, use ":all" to include all groups under the same species]:group:_pdm_groups'
+        "--without+[Exclude groups of optional-dependencies or dev-dependencies]:group:_pdm_groups"
         {-L,--lockfile}'[Specify another lockfile path, or use `PDM_LOCKFILE` env variable. Default: pdm.lock]:lockfile:_files'
         '--save-compatible[Save compatible version specifiers]'
         '--save-wildcard[Save wildcard version specifiers]'
@@ -424,6 +481,7 @@ _pdm() {
         "--dry-run[Show the difference only without modifying the lockfile content]"
         "--outdated[Show the difference only without modifying the lockfile content]"
         {-x,--fail-fast}'[Abort on first installation error]'
+        {-C,--config-setting}'[Pass options to the backend. options with a value must be specified after "=": "--config-setting=key(=value)" or "-Ckey(=value)"]:cs:'
         "--no-isolation[do not isolate the build in a clean environment]"
         '--venv[Run the command in the virtual environment with the given key. \[env var: PDM_IN_VENV\]]:venv:'
         "*:packages:_pdm_packages"

home/private_dot_config/zsh/completions/_rclone

@@ -1,4 +1,5 @@
-#compdef _rclone rclone
+#compdef rclone
+compdef _rclone rclone
 
 # zsh completion for rclone                               -*- shell-script -*-
 
@@ -17,8 +18,9 @@ _rclone()
     local shellCompDirectiveNoFileComp=4
     local shellCompDirectiveFilterFileExt=8
     local shellCompDirectiveFilterDirs=16
+    local shellCompDirectiveKeepOrder=32
 
-    local lastParam lastChar flagPrefix requestComp out directive comp lastComp noSpace
+    local lastParam lastChar flagPrefix requestComp out directive comp lastComp noSpace keepOrder
     local -a completions
 
     __rclone_debug "\n========= starting completion logic =========="
@@ -86,7 +88,24 @@ _rclone()
         return
     fi
 
+    local activeHelpMarker="_activeHelp_ "
+    local endIndex=${#activeHelpMarker}
+    local startIndex=$((${#activeHelpMarker}+1))
+    local hasActiveHelp=0
     while IFS='\n' read -r comp; do
+        # Check if this is an activeHelp statement (i.e., prefixed with $activeHelpMarker)
+        if [ "${comp[1,$endIndex]}" = "$activeHelpMarker" ];then
+            __rclone_debug "ActiveHelp found: $comp"
+            comp="${comp[$startIndex,-1]}"
+            if [ -n "$comp" ]; then
+                compadd -x "${comp}"
+                __rclone_debug "ActiveHelp will need delimiter"
+                hasActiveHelp=1
+            fi
+
+            continue
+        fi
+
         if [ -n "$comp" ]; then
             # If requested, completions are returned with a description.
             # The description is preceded by a TAB character.
@@ -94,7 +113,7 @@ _rclone()
             # We first need to escape any : as part of the completion itself.
             comp=${comp//:/\\:}
 
-            local tab=$(printf '\t')
+            local tab="$(printf '\t')"
             comp=${comp//$tab/:}
 
             __rclone_debug "Adding completion: ${comp}"
@@ -103,11 +122,27 @@ _rclone()
         fi
     done < <(printf "%s\n" "${out[@]}")
 
+    # Add a delimiter after the activeHelp statements, but only if:
+    # - there are completions following the activeHelp statements, or
+    # - file completion will be performed (so there will be choices after the activeHelp)
+    if [ $hasActiveHelp -eq 1 ]; then
+        if [ ${#completions} -ne 0 ] || [ $((directive & shellCompDirectiveNoFileComp)) -eq 0 ]; then
+            __rclone_debug "Adding activeHelp delimiter"
+            compadd -x "--"
+            hasActiveHelp=0
+        fi
+    fi
+
     if [ $((directive & shellCompDirectiveNoSpace)) -ne 0 ]; then
         __rclone_debug "Activating nospace."
         noSpace="-S ''"
     fi
 
+    if [ $((directive & shellCompDirectiveKeepOrder)) -ne 0 ]; then
+        __rclone_debug "Activating keep order."
+        keepOrder="-V"
+    fi
+
     if [ $((directive & shellCompDirectiveFilterFileExt)) -ne 0 ]; then
         # File extension filtering
         local filteringCmd
@@ -125,7 +160,7 @@ _rclone()
         _arguments '*:filename:'"$filteringCmd"
     elif [ $((directive & shellCompDirectiveFilterDirs)) -ne 0 ]; then
         # File completion for directories only
-        local subDir
+        local subdir
         subdir="${completions[1]}"
         if [ -n "$subdir" ]; then
             __rclone_debug "Listing directories in $subdir"
@@ -143,7 +178,7 @@ _rclone()
         return $result
     else
         __rclone_debug "Calling _describe"
-        if eval _describe "completions" completions $flagPrefix $noSpace; then
+        if eval _describe $keepOrder "completions" completions $flagPrefix $noSpace; then
             __rclone_debug "_describe found some completions"
 
             # Return the success of having called _describe
@@ -173,5 +208,5 @@ _rclone()
 
 # don't run the completion function when being source-ed or eval-ed
 if [ "$funcstack[1]" = "_rclone" ]; then
-	_rclone
+    _rclone
 fi

home/private_dot_config/zsh/completions/executable_update.sh

@@ -23,4 +23,4 @@ gen chezmoi completion zsh
 gen rye self completion -s zsh
 gen gh completion -s zsh
 gen pixi completion -s zsh
-gen rclone completion zsh
+gen rclone completion zsh -