shfmt formatting

system/alias.sh

@@ -50,9 +50,8 @@ alias vivaldi="vivaldi-stable"
 #zellij
 if is-exectuable zellij; then
 
-    alias zs="zellij -s"
+	alias zs="zellij -s"
-    alias zl="zellij ls"
+	alias zl="zellij ls"
-    alias za="zellij a"
+	alias za="zellij a"
 fi
 ##########################################
-

system/conda.sh

@@ -2,22 +2,21 @@
 
 # >>> conda initialize >>>
 # !! Contents within this block are managed by 'conda init' !!
-__conda_setup="$('$HOME/mambaforge/bin/conda' 'shell.zsh' 'hook' 2> /dev/null)"
+__conda_setup="$('$HOME/mambaforge/bin/conda' 'shell.zsh' 'hook' 2>/dev/null)"
 if [ $? -eq 0 ]; then
-    eval "$__conda_setup"
+	eval "$__conda_setup"
 else
-    if [ -f "$HOME/mambaforge/etc/profile.d/conda.sh" ]; then
+	if [ -f "$HOME/mambaforge/etc/profile.d/conda.sh" ]; then
-        . "$HOME/mambaforge/etc/profile.d/conda.sh"
+		. "$HOME/mambaforge/etc/profile.d/conda.sh"
-    else
+	else
-        export PATH="$HOME/mambaforge/bin:$PATH"
+		export PATH="$HOME/mambaforge/bin:$PATH"
-    fi
+	fi
 fi
 unset __conda_setup
 
 if [ -f "$HOME/mambaforge/etc/profile.d/mamba.sh" ]; then
-    . "$HOME/mambaforge/etc/profile.d/mamba.sh"
+	. "$HOME/mambaforge/etc/profile.d/mamba.sh"
 fi
 # <<< conda initialize <<<
 
 [ -d "$HOME/mambaforge/envs/dev" ] && conda activate dev
-

system/custom.sh

@@ -1,9 +1,8 @@
 # env variables
-if ! [ $(cat /etc/hostname)=="thinkpad" ];then
+if ! [ $(cat /etc/hostname)=="thinkpad" ]; then
-    export BROWSER=/mnt/c/Users/daylin/AppData/Local/Vivaldi/Application/vivaldi.exe
+	export BROWSER=/mnt/c/Users/daylin/AppData/Local/Vivaldi/Application/vivaldi.exe
 else
-    export BROWSER=vivaldi-stable
+	export BROWSER=vivaldi-stable
 fi
 # aliases
 alias files=explorer.exe
-

system/env.sh

@@ -4,8 +4,8 @@ export XDG_DATA_HOME="${XDG_DATA_HOME:-$HOME/.local/share}"
 
 export PATH=$PATH:~/bin
 
-export HISTSIZE=32768;
+export HISTSIZE=32768
-export HISTFILESIZE="${HISTSIZE}";
+export HISTFILESIZE="${HISTSIZE}"
 export SAVEHIST=4096
 export HISTCONTROL=ignoredups:erasedups
 
@@ -30,11 +30,10 @@ fi
 # setopt CORRECT
 # setopt CORRECT_ALL
 
-
 # Setup fzf
 # ---------
-if [[ ! "$PATH" == *$HOME/.fzf/bin* ]]; then
+if [[ $PATH != *$HOME/.fzf/bin* ]]; then
-  export PATH="${PATH:+${PATH}:}$HOME/.fzf/bin"
+	export PATH="${PATH:+${PATH}:}$HOME/.fzf/bin"
 fi
 
 if is-executable fzf; then
@@ -54,7 +53,7 @@ fi
 #[ -s "$NVM_DIR/nvm.sh" ] && \. "$NVM_DIR/nvm.sh"  # This loads nvm
 #[ -s "$NVM_DIR/bash_completion" ] && \. "$NVM_DIR/bash_completion"  # This loads nvm bash_completion
 if is-executable fnm; then
-    eval "$(fnm env)"
+	eval "$(fnm env)"
 fi
 
 # enhancd

system/function.sh

@@ -1,58 +1,58 @@
 function cl() {
-    DIR="$*";
+	DIR="$*"
-        # if no DIR given, go home
+	# if no DIR given, go home
-        if [ $# -lt 1 ]; then
+	if [ $# -lt 1 ]; then
-                DIR=$HOME;
+		DIR=$HOME
-    fi;
+	fi
-    builtin cd "${DIR}" && \
+	builtin cd "${DIR}" &&
-    # use your preferred ls command
+		# use your preferred ls command
-        ls -F --color=auto
+		ls -F --color=auto
 }
 
 prepend-path() {
-  [ -d $1 ] && PATH="$1:$PATH"
+	[ -d $1 ] && PATH="$1:$PATH"
 }
 
 #delete and reclone remote repo
-reclone () {
+reclone() {
-    basename=${PWD##*/}
+	basename=${PWD##*/}
-    remoteurl=$(git remote get-url --push origin)
+	remoteurl=$(git remote get-url --push origin)
-    cd ..
+	cd ..
-    echo $basename
+	echo $basename
-    echo $remoteurl
+	echo $remoteurl
-    rm -rf $basename
+	rm -rf $basename
-    git clone $remoteurl
+	git clone $remoteurl
-    cd $basename
+	cd $basename
 }
 
 # snakemake use all cores by default
 sm() {
-    if [[ "$*" == *"-j"* || "$*" == *"--jobs"* || "$*" == *"--cores"* ]]; then
+	if [[ $* == *"-j"* || $* == *"--jobs"* || $* == *"--cores"* ]]; then
-        snakemake $@
+		snakemake $@
-    else
+	else
-        snakemake -j all $@
+		snakemake -j all $@
-    fi
+	fi
 }
 
 function gi() {
-    curl -sL "https://www.toptal.com/developers/gitignore/api/$@" ;
+	curl -sL "https://www.toptal.com/developers/gitignore/api/$@"
-    }
-
-
-# make pdfs or svgs from vegalite json's
-mkvegapdf () {
-    vl2vg $1 | vg2pdf > $2
 }
 
-mkvegasvg () {
+# make pdfs or svgs from vegalite json's
-    vl2vg $1 | vg2svg > $2
+mkvegapdf() {
+	vl2vg $1 | vg2pdf >$2
+}
+
+mkvegasvg() {
+	vl2vg $1 | vg2svg >$2
 }
 
 # quick and dirty pdf generation from simple md
-md2pdf () {
+md2pdf() {
 	root=$1
 	# get extension and root path: https://stackoverflow.com/a/40928328
-	fname="${root#.}";fname="${root%"$fname"}${fname%.*}"
+	fname="${root#.}"
+	fname="${root%"$fname"}${fname%.*}"
 	ext="${root#"$fname"}"
 	echo "converting $root to pdf"
 
@@ -66,7 +66,7 @@ md2pdf () {
 
 }
 
-py2nb2html () {
+py2nb2html() {
 	if [ $# -eq 0 ]; then
 		echo "No arguments provided"
 		return 1
@@ -77,8 +77,7 @@ py2nb2html () {
 	jupytext --to notebook -o - $pyfile | jupyter nbconvert --execute --to html --stdin $@
 }
 
-web () {
+web() {
 	filepath=$(wslpath -w $1)
 	$BROWSER $filepath
 }
-

system/path.sh

@@ -26,8 +26,8 @@ PATH="$HOME/go/bin:$PATH"
 # PATH="$(perl -e 'print join(":", grep { not $seen{$_}++ } split(/:/, $ENV{PATH}))')"
 # printf %s "$PATH" | awk -v RS=: -v ORS=: '!arr[$0]++'
 
-PATH=$(printf %s "$PATH" \
+PATH=$(printf %s "$PATH" |
-     | awk -vRS=: -vORS= '!a[$0]++ {if (NR>1) printf(":"); printf("%s", $0) }' )
+	awk -vRS=: -vORS= '!a[$0]++ {if (NR>1) printf(":"); printf("%s", $0) }')
 # Wrap up
 
 export PATH