85 lines
1.6 KiB
Bash
85 lines
1.6 KiB
Bash
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function cl() {
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DIR="$*";
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# if no DIR given, go home
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if [ $# -lt 1 ]; then
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DIR=$HOME;
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fi;
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builtin cd "${DIR}" && \
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# use your preferred ls command
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ls -F --color=auto
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}
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prepend-path() {
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[ -d $1 ] && PATH="$1:$PATH"
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}
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#delete and reclone remote repo
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reclone () {
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basename=${PWD##*/}
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remoteurl=$(git remote get-url --push origin)
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cd ..
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echo $basename
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echo $remoteurl
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rm -rf $basename
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git clone $remoteurl
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cd $basename
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}
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# snakemake use all cores by default
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sm() {
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if [[ "$*" == *"-j"* || "$*" == *"--jobs"* || "$*" == *"--cores"* ]]; then
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snakemake $@
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else
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snakemake -j all $@
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fi
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}
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function gi() {
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curl -sL "https://www.toptal.com/developers/gitignore/api/$@" ;
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}
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# make pdfs or svgs from vegalite json's
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mkvegapdf () {
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vl2vg $1 | vg2pdf > $2
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}
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mkvegasvg () {
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vl2vg $1 | vg2svg > $2
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}
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# quick and dirty pdf generation from simple md
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md2pdf () {
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root=$1
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# get extension and root path: https://stackoverflow.com/a/40928328
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fname="${root#.}";fname="${root%"$fname"}${fname%.*}"
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ext="${root#"$fname"}"
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echo "converting $root to pdf"
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if [[ $ext != ".md" ]]; then
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echo "error! expected a markdown file"
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echo "unrecognized extension: $ext"
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return 1
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fi
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pandoc -V geometry:a5paper -V geometry:margin=.5in --dpi=300 -o ${fname}.pdf $root
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}
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py2nb2html () {
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if [ $# -eq 0 ]; then
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echo "No arguments provided"
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return 1
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fi
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pyfile=$1
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shift
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echo "generating html file for $pyfile"
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jupytext --to notebook -o - $pyfile | jupyter nbconvert --execute --to html --stdin $@
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}
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web () {
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filepath=$(wslpath -w $1)
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$BROWSER $filepath
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}
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